Research Software Developer Position
2 weeks ago
We are seeking a highly skilled Software Developer 1 to join the Kundaje and Bassik labs in the Department of Genetics at Stanford University.
About the Role:The successful candidate will lead and assist with collaborative software development, data analysis, and research at the intersection of genomics, data science, and machine learning.
Key Responsibilities- Collaborate and participate in large consortia to assess needs and requirements.
- Design and develop pipelines and analysis approaches for single cell genomics.
- Maintain and update existing software frameworks for regulatory genomics in the Kundaje and Bassik lab.
- Troubleshoot and solve technical problems.
- Develop and maintain data processing pipelines for CRISPR screen analysis, sgRNA library design, and data integration from CRISPR screens with other data types.
- Develop tutorials and demos for flagship software products in the lab.
- Serve as technical resource with respect to applications and assist lab members with software engineering best practices and design.
- PhD degree in a relevant field.
- Strong experience with bioinformatics tools and biostatistics for analysis of bulk and single cell RNA-seq and ATAC-seq.
- Familiarity with CRISPR screening approaches.
- Strong data science and software engineering experience in Python, R, Unix scripting.
- Experience leading collaborations between clinicians, wet lab biologists, and computational scientists.
- Experience building community around computational biology, such as hosting conferences, meetups, or other events related to machine learning and cloud computing for biological applications.
- Product management experience defining requirements and managing project timelines from early development to broad deployment.
- Project management experience leading small teams to deliver products in a timely fashion.
- Ability to define and solve logical problems for technical applications.
- Solid analytical skills.
- Excellent written and oral English communication and interpersonal skills.
- Ability to understand scientific literature, experimental procedures, and their limitations, and current needs of the research community.
This role comes with a salary range of $80,000 - $135,000 per annum and offers a comprehensive benefits package.
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