Senior Clinical Informatics Engineer

3 weeks ago


San Diego, California, United States Helix Full time
About the Role

We are seeking a highly skilled Clinical Informatics Engineer to join our team at Helix. As a key member of our Data Engineering team, you will play a pivotal role in providing a first-in-class clinico-genomics research dataset for our partners to conduct and publish cutting-edge genomic studies and operational insights back to health systems.

As a Clinical Informatics Engineer, you will be responsible for maintaining infrastructure to enable data users to perform analyses, as well as develop new tooling to support our scientists and analysts. You will work closely with our Research, Bioinformatics, and Engineering teams to standardize, integrate, normalize, and analyze large clinical data sets from multiple health care providers.

Key Responsibilities:

  • Be our internal expert for setting standards and patterns for our OMOP clinical data warehouse
  • Work closely with our health system partners to establish and maintain EHR data pipelines
  • Utilize strong technical, clinical, analytical skills to standardize, integrate, normalize, and analyze large clinical data sets from multiple health care providers
  • Develop and streamline algorithms to assess the completeness, integrity, and reliability of data and the validity and accuracy of analytical results
  • Create databases, datasets, and reports and perform statistical analyses appropriate to data
  • Work closely with our Research team to build RWE hypotheses, measure, test, and validate clinical outcomes
  • Write reports, develop presentation materials, and contribute to manuscripts to clearly communicate methodologies and findings to technical, business, and clinical audiences, both internal and external
  • Work cross-functionally with our Research, Analytics, and Engineering teams

About You

We are looking for a highly skilled and experienced Clinical Informatics Engineer with a strong background in health informatics, biostatistics, computer science, or a related scientific discipline. You should have experience writing ETL pipelines using the OMOP CDM and strong knowledge of current standards of healthcare data exchange (e.g. OMOP, FHIR) and common clinical coding standards (ICD, CPT, LOINC, SNOMED-CT).

Key Requirements:

  • Master's Degree or higher in Health Informatics, Biostatistics, Computer Science, or other related scientific discipline
  • Experience writing ETL pipelines using the OMOP CDM
  • Strong knowledge of current standards of healthcare data exchange (e.g. OMOP, FHIR) and common clinical coding standards (ICD, CPT, LOINC, SNOMED-CT)
  • At least 5 years of experience in a healthcare information technology setting (payor, health system/provider, or gov't)
  • Strong programming skills in Python, SQL, Spark
  • Excellent communication skills, oral and written
  • Ability to work with various sources of data; familiar with database design, typical healthcare data models, and data manipulation/cleansing techniques
  • Experience working in cloud environments (AWS or GCP)
  • Experience with pipeline orchestration tools (Airflow or similar)
  • Ability to think creatively to solve problems on tight timelines
  • Strong analytical and problem-solving skills; desire to learn and grow in healthcare industry
  • Adaptable in a fast-paced startup environment where priorities may change quickly and frequently

What We Offer

We offer a competitive salary range of $145,000 - $197,500, a generous equity package, and a comprehensive benefits package, including comprehensive health insurance, 12 weeks of paid parental leave, 401(k) with employer matching, and a flexible PTO policy.

What to Expect During Your Onboarding Week

We want to make sure your first week is spent learning the foundations. You will be invited to live orientation sessions and spend time with your hiring manager developing your individual roadmap to success. This experience will include sessions that cover your benefits, security & privacy training, an introduction to the OKR framework used at Helix and our communication tools and norms.

What to Expect During Your First 90 Days

First 30 days: you'll spend time learning the Helix way, completing training and onboarding for your roles, and getting introduced to your team and relevant stakeholders. You'll also gain a deeper understanding of our customers, our products, the impact we make in the lives of our communities, and how to thrive at Helix through participation in Helix U.

Day 30 - 60: you'll spend time contributing to projects, deeply familiarizing yourself with team and company processes, and developing a deeper understanding of Helix's products, services and capabilities.

Day 60 - 90: you'll build your OKRs with your manager, start to take ownership of projects and initiatives on your team, and begin to demonstrate your impact on the Helix mission.



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