Senior Machine Learning Engineer

9 hours ago


Cambridge, United States Deep Genomics Full time
Transform the Future of Medicine with Deep Genomics

Are you passionate about leveraging AI to revolutionize drug discovery? Join Deep Genomics as we decode RNA biology to uncover breakthrough therapies

About Us

Deep Genomics is at the forefront of using artificial intelligence to transform drug discovery. Our cutting-edge AI platform decodes the complexity of RNA biology to identify novel drug targets, mechanisms, and therapeutics inaccessible through traditional methods. With expertise spanning machine learning, bioinformatics, data science, engineering, and drug development, our multidisciplinary team in Toronto and Cambridge, MA is revolutionizing how new medicines are created.

About the Role

As a Senior ML Engineer, you'll architect scalable systems that accelerate our ability to translate AI insights into life-changing therapies. You'll work at the intersection of machine learning and biology, pushing the boundaries of what's possible in drug discovery.

Key Responsibilities:
    • Maintain and improve data ingestion and processing pipelines for scalability, reproducibility, reliability, and speed
    • Improve the training and inference speeds of a large class of ML models including transformer-based architectures, structured state-space models, graph neural networks, and many others
    • Design, implement, and deploy ways to make complex deep learning models usable by biologists and other domain specialists
    • Manage ML infrastructure, both on premises and in the cloud
    • Rapidly prototype POCs in partnership with ML scientists and other stakeholders
    • Test models at scale and ensure CI/CD best practices are followed by the whole team
Basic Qualifications:
    • 3+ years of experience
    • Expertise in ML frameworks (e.g., PyTorch, TensorFlow)
    • Strong background in distributed systems and containerization
    • Self-motivated problem-solver with excellent communication skills
    • Adaptability to evolving requirements in a fast-paced field
    • Ability to mentor and elevate team members' skills
Preferred Qualifications:
    • Previous startup experience bringing ML prototypes to production
    • Familiarity with bioinformatics data/pipelines
    • Knowledge of MLFlow, Kubeflow, Ray, Dask, Fluidstack, or similar tools
What we offer:
    • A highly competitive salary, a meaningful equity ownership stake in Deep Genomics, and exceptional opportunities for learning and growth
    • Company paid benefits
    • Exceptional opportunities for learning and growth in a world-class team of researchers and software developers, working at the intersection of the most exciting areas of science and technology


Deep Genomics welcomes and encourages applications from people with disabilities. Accommodations are available on request for candidates taking part in all aspects of the selection process.

Deep Genomics thanks all applicants, however only those selected for an interview will be contacted.

  • Cambridge, United States Capital One Full time

    Senior Machine Learning Engineering Manager As a Senior Machine Learning Engineering Manager at Capital One, you will lead a team dedicated to scaling and operationalizing machine learning applications. You will contribute to technical design, development, and implementation of machine learning applications, with a focus on architectural design and...


  • Cambridge, MA, United States DeepRec.ai Full time

    (Senior) Machine Learning Engineer (Large Language Models)Location: Hybrid 3 days a week onsite in Cambridge, Massachusetts, USADeepRec.ai seeks a dedicated Machine Learning Engineer to join our client's innovative team in Cambridge, Massachusetts. This is the chance to join a mission driven fast growing and well funded startup on a mission to to transform...


  • CAMBRIDGE, United States Capital One Careers Full time

    Center 3 (19075), United States of America, McLean, VirginiaSenior Manager, Machine Learning EngineeringAs a Capital One Machine Learning Engineer (MLE), you'll be part of an Agile team dedicated to productionizing machine learning applications and systems at scale. You’ll participate in the detailed technical design, development, and implementation of...


  • Cambridge, United States Flagship Ventures Full time

    Company Summary Flagship Labs 97 Inc. (FL97) is a privately held, early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. FL97 is backed by Flagship Pioneering, which brings the courage, long-term vision, and resources needed to realize unreasonable results. Join our...


  • Cambridge, United States Stealth Mode Biotech Full time

    This Stealth Mode Company is a top-tier venture backed, privately held biotechnology company on a mission to create "a new modality to end all modalities". The team is aspiring to drastically scale up and change the trajectory of drug discovery by tackling the biggest challenges of existing modalities, and applying the platform to targets with the highest...


  • Cambridge, United States Deep Genomics Full time

    Transform the Future of Medicine with Deep Genomics Are you passionate about leveraging AI to revolutionize drug discovery? Join Deep Genomics as we decode RNA biology to uncover breakthrough therapies! About Us Deep Genomics is at the forefront of using artificial intelligence to transform drug discovery. Our cutting-edge AI platform decodes the complexity...

  • Senior Data Engineer

    1 month ago


    Cambridge, Massachusetts, United States Harvard University Full time

    Job OverviewHarvard University seeks a Senior Data Engineer to join our Office of the Vice Provost for Advances in Learning (VPAL) team. As a key member of our technology group, you will play a critical role in developing and maintaining our learning platforms, ensuring seamless data integration, and driving business value through data-driven insights.About...


  • Cambridge, Massachusetts, United States Apple Full time

    Are you passionate about overseeing the development of machine learning models and validating AI applications? We are looking for an engineering program manager to lead the development of the next phase of our ML international locales expansion. The successful candidate will have a proven track record of conceptualizing and delivering technically complex...


  • Cambridge, United States Flagship Ventures Full time

    The Company: Mirai Bio is a Flagship backed, privately held biotechnology company on a mission to transform the current approach to information molecule therapeutics to unlock their full therapeutic potential. In recent years, we have begun to experience the power of information molecules in treating historically undruggable diseases and in designing...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    Job Summary:Mirai Bio is a cutting-edge biotechnology company that is transforming the approach to information molecule therapeutics. We are seeking a highly skilled Head of Machine Learning to drive the vision, strategy, and execution across machine learning and data generation efforts.


  • Cambridge, United States Flagship Ventures Full time

    Who We Are Flagship Pioneering is a bioplatform innovation company that invents and builds platform companies that change the world. We bring together the greatest scientific minds with entrepreneurial company builders and assemble the capital to allow them to take courageous leaps. Those big leaps in human health and sustainability exponentially accelerate...


  • Cambridge, United States Capital One Full time

    Center 3 (19075), United States of America, McLean, VirginiaSenior Director, Technical Program Management (Enterprise Data and Machine Learning)About Capital One: At Capital One, we're changing banking for good. We were founded on the belief that no one should be locked out of the financial system. We're dedicated to helping foster a world where everyone has...


  • Cambridge, United States Flagship Ventures Full time

    Company Summary Flagship Labs 97 Inc. (FL97) is a privately held, early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. FL97 is backed by Flagship Pioneering, which brings the courage, long-term vision, and resources needed to realize unreasonable results. Join our...


  • Cambridge, United States Flagship Ventures Full time

    Company Summary Flagship Labs 97 Inc. (FL97) is a privately held, early-stage technology company pioneering the application of artificial intelligence to transform every aspect of the scientific method. FL97 is backed by Flagship Pioneering, which brings the courage, long-term vision, and resources needed to realize unreasonable results. Join our...

  • Senior Data Scientist

    2 weeks ago


    Cambridge, Massachusetts, United States Takeda Pharmaceutical Company Ltd Full time

    Job DescriptionAt Takeda Pharmaceutical Company Ltd, we are seeking a skilled Senior Data Scientist to join our Advanced Analytics and Digital Engineering team in Cambridge, MA.The ideal candidate will have expertise in machine learning, deep learning, and data wrangling, with a strong background in data analysis and presentation.This role involves working...


  • Cambridge, United States The AI Institute Full time

    Our mission is to solve the most important and fundamental challenges in AI and Robotics, enabling future generations of intelligent machines that will help us all live better lives. Our software engineers bring the depth and rigor of industry experience to the Institute, where a solid foundation of engineering is essential for groundbreaking research. If...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    About Flagship PioneeringFlagship Pioneering is a bioplatform innovation company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability.Our MissionWe are committed to addressing humanity's most urgent challenges: vaccinating billions of people against COVID-19, curing...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    Flagship Ventures is a Flagship-backed, privately held biotechnology company on a mission to revolutionize the approach to information molecule therapeutics and unlock their full therapeutic potential. With a focus on transforming the current paradigm in R&D for information molecule medicines, we are seeking a skilled Lead Machine Learning Architect,...


  • Cambridge, United States Context Labs Full time

    Senior Frontend Engineer Cambridge, MA (Hybrid) Context Labs is seeking a Senior Frontend Engineer to help drive development of our products' Web and Mobile interfaces. As a part of the scrum team, you will help with all aspects of UI design and development. You'll work closely with stakeholders to determine optimal user experiences and collaborate with the...

  • Senior AI Engineer

    1 month ago


    Cambridge, United States Capital One Full time

    11 West 19th Street (22008), United States of America, New York, New YorkSenior AI EngineerOverview:At Capital One, we are creating responsible and reliable AI systems, changing banking for good. For years, Capital One has been an industry leader in using machine learning to create real-time, personalized customer experiences. Our investments in technology...