Bioinformatics Programmer
2 weeks ago
CoLabs Admin
Full Time
82981BR
Job Summary
We are seeking a bioinformatics programmer with a B.S., M.S., or equivalent, in fields relating to molecular biology, bioinformatics or computer science. Working as part of a multidisciplinary group and independently, the bioinformatics programmer will perform statistical analyses of high throughput genomics data, especially bulk-cell and single-cell RNA-sequencing data, by developing novel, and using or adapting existing computational pipelines and algorithms. The job candidate will write code to process genomic data sets, generate reports, and present the results to collaborators. S/he will work from standard analysis pipelines and modify code to fit individual projects. S/he will interact closely with core lab members and collaborate with other bioinformaticians doing similar work at UCSF and elsewhere.
Primary job responsibilities:
- Carrying out data analysis on bulk cell and single cell RNA-seq projects.
- Carrying out analysis of ATAC-seq, ChIP-seq, Whole genome sequencing and other NGS approaches.
- Developing novel workflows for NGS sequencing analysis.
- Communicating and providing results to researchers using the core.
- Provide bioinformatic support during sequencing QC.
- Support research efforts of labs utilizing next generation sequencing technologies.
Job requirements:
- Understanding of basic molecular genetics.
- Experience working with next generation sequencing (NGS) methodologies and applications.
- Proficient in Python and R.
- Experience working in Linux/Unix systems, including using command line tools.
- Excellent verbal and written communication skills.
- Strong organizational and interpersonal skills for working in a multidiscipline and collaborative team.
The CoLabs
The CoLabs are a collection of integrated laboratories specializing in infrastructure or technologies. It seeks to revitalize the model for core resources by capitalizing on critical personnel and cutting-edge technologies and driving collaboration across disciplines.
Department Description
The Genomics CoLab serves as an innovative hub of molecular biologists, genomicists and bioinformaticians engaging in collaborative research across UCSF campuses. At the Genomics CoLab, we emphasize in the development of novel genomic approaches and providing advanced genomic and bioinformatic resources for investigators who wish to integrate modern genomic approaches into biological research.
Required Qualifications
- Bachelor's degree, or equivalent experience, in molecular biology, bioinformatics, computer science or related field
- Minimum of 1 year of directly related experience.
- Knowledge of molecular genetic principles.
- Proficient in Python and R.
- Strong consultation and communication skills.
- Strong organizational and interpersonal skills for working in a multidiscipline and collaborative team.
- Experience with next generation sequencing (NGS) methodologies and applications.
- Experience in Linux/Unix systems
Preferred Qualifications
N/A
About UCSF
The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care.
Pride Values
UCSF is a diverse community made of people with many skills and talents. We seek candidates whose work experience or community service has prepared them to contribute to our commitment to professionalism, respect, integrity, diversity and excellence - also known as our PRIDE values.
Equal Employment Opportunity
The University of California San Francisco is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, protected veteran or disabled status, or genetic information.
Organization
Campus
Job Code and Payroll Title
009402 BIOINFORMATICS PROGR 2
Job Category
Clinical Systems / IT Professionals
Bargaining Unit
99 - Policy-Covered (No Bargaining Unit)
Employee Class
Career
Percentage
100%
Location
San Francisco, CA
Campus
Parnassus Heights (SF)
Work Style
Fully On-Site
Shift
Days
Shift Length
8 Hours
Additional Shift Details
Monday to Friday; 9am to 5:30pm
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