Software Engineer Bioinformatics

12 hours ago

Providence, United States Nabsys Full time

Be part of a dynamic team that is using nanotechnology to enable routine, accurate, cost-effective analysis of genomic structural variation, in support of our mission of elucidating the genetic underpinnings of disease, increasing diagnostic yield, and ultimately improving patient outcomes. Nabsys is the pioneer in high-definition electronic genome mapping.


Headquartered in Providence, RI, Nabsys uses proprietary electronic nanodetectors to analyze long DNA molecules traveling at high velocity.


Today Nabsys stands at the threshold of a new era in genomics with the introduction of the OhmX platform. This groundbreaking technology empowers us to map human genomes at an unprecedented scale. Building on our expertise, we’re once again setting our sights on the whole-genome mapping market, with a renewed focus on the human genome.


Title: Software Engineer Bioinformatics

Nature of Role: You will be working directly with our bioinformatics application research and development team, creating robust customer-facing pipelines and applications. In this collaborative role, you will be bringing software engineering best practices to the group, maintaining version-controlled code, providing test frameworks, and promoting internal test. You will be writing high quality python code, based off work generated from the research team. You will also be working closely with cloud team members to ensure applications are enabled for cloud usage, including containerization, versioning, and cloud storage access.


This position reports to the Senior Director of Software Engineering.


Responsibilities:

  • Contribute to visualization of application generated outputs
  • Work with the bioinformatics team during research and development to ensure algorithms are implemented in an efficient and elegant manner
  • Collaborate with cloud and commercial teams to ensure application requirements are met
  • Enable software projects to run in both cloud and local environments
  • Create and maintain robust test frameworks
  • Generate documentation for each project, including internal and external release notes
  • Participate in code reviews, release management, project planning, and other agile software development activities


Requirements:

  • Proficient with python and key modules including numerical, statistical, and visualization modules
  • Strong math and statistics background
  • Demonstrated experience working on customer-facing applications in a cloud environment
  • Experience working with large datasets and computationally intensive algorithms in a large multi-core, multi-threaded environment, with insights into algorithm efficiency
  • Experience creating various visualizations of numerical outputs
  • Strong interpersonal skills with ability to effectively work in a team environment and build strong relationships
  • Bachelor’s Degree from an accredited four-year college or university
  • 5+ years of relevant work experience


Compensation:

  • Competitive salary and bonus structure
  • Equity stake
  • Benefits include health, dental, vision, 401(k) plan with 50% match up to 6% of base salary, unlimited vacation, life insurance

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