Director, Principal Machine Learning Scientist

6 days ago


Cambridge, Massachusetts, United States Bayer Full time $182,338 - $273,506

At Bayer we're visionaries, driven to solve the world's toughest challenges and striving for a world where 'Health for all Hunger for none' is no longer a dream, but a real possibility. We're doing it with energy, curiosity and sheer dedication, always learning from unique perspectives of those around us, expanding our thinking, growing our capabilities and redefining 'impossible'. There are so many reasons to join us. If you're hungry to build a varied and meaningful career in a community of brilliant and diverse minds to make a real difference, there's only one choice.

Director, Principal Machine Learning Scientist 

Meeting some of the most pressing healthcare and sustainability needs of our time, at Bayer we leverage the most advanced technologies to accelerate the discovery of new medicines. The Machine Learning Research team is seeking a passionate research scientist who will lead the development of innovative machine learning solutions for proteomic data analysis together with our R&D partners.

YOUR TASKS AND RESPONSIBILITIES

The primary responsibilities of the Director, Principal Machine Learning Scientist are to:

  • Identify opportunities to enhance R&D's productivity and further our portfolio goals, across therapeutic areas, by leveraging proteomic and chemo-proteomic data with novel machine learning solutions;
  • Propose and catalyze the co-creation and implementation of interdisciplinary, machine learning solutions in support of target characterization, mode of action deconvolution, hit identification, and small-molecule design;
  • Collaborate with our experimental and computational R&D partners at Bayer and arm-lengths companies to prioritize, develop and ultimately leverage data science capabilities in support of our pipeline;
  • Work cross-functionally with data science, computational, and IT functions to deploy, scale-up, and operationalize relevant data science solutions;
  • Keep up to date with the latest advances in (chemo)proteomics data processing and analysis, and machine learning algorithms for protein-ligand structure and property prediction;
  • Contribute to the broader scientific community through publications, open-source projects, and conference presentations;
  • Apply an analytical, data-driven mindset to addressing business needs and goals, and nurture the self-development of leadership traits (including acting as a mentor and coach, guiding teams toward business outcomes, facilitating company-wide connections and collaboration, and contributing to value creating systems that leverage the passion and energy of our people).

WHO YOU ARE

Bayer seeks an incumbent who possesses the following:

Required Qualifications:

  • Ph.D. degree in Computational Chemistry/Biology, Chem/Bioinformatics, Chemical/Biological/Molecular Engineering, or a related field at the intersection of life sciences and computer science;
  • Experience in omics data analysis, including development and evaluation of machine learning solutions to extract actionable insights from large, multiparametric omics datasets;
  • Excellent programming skills in Python;
  • Demonstrated expertise with data science, machine and deep learning libraries (e.g., PyTorch, JAX, scikit-learn), including relevant chemistry/biology libraries and software tools (e.g., RDkit, OEChem TK, Biopython).

Preferred Qualifications:

  • 8+ years of relevant post-PhD experience, including 4+ years in industry;
  • Experience with machine learning solutions for proteomic and/or chemo-proteomic data analysis;
  • Experience in drug discovery projects in target characterization, mode of action deconvolution, small-molecule hit generation, hit-to-lead, and/or lead optimization;
  • Familiarity with molecular modeling and design software (e.g., Maestro, LiveDesign, MOE, Discovery Studio, Flare, Pipeline Pilot);
  • Strong record of publications or patents related to data science solutions for chemistry and/or biology.

Employees can expect to be paid a salary between $182, $273, Additional compensation may include a bonus or commission (if relevant). Additional benefits include healthcare, vision, dental, retirement, PTO, sick leave, etc.

This salary range is merely an estimate and may vary based on an applicant's location, market data/ranges, skills, prior relevant experience, certain degrees and certifications, and other relevant factors.

This posting will be available for application until at least 10/20/2025.

  YOUR APPLICATION   

Bayer offers a wide variety of competitive compensation and benefits programs. If you meet the requirements of this unique opportunity, and want to impact our mission Science for a better life, we encourage you to apply now. Be part of something bigger. Be you. Be Bayer. 
To all recruitment agencies: Bayer does not accept unsolicited third party resumes.
 
Bayer is an Equal Opportunity Employer/Disabled/Veterans
 
Bayer is committed to providing access and reasonable accommodations in its application process for individuals with disabilities and encourages applicants with disabilities to request any needed accommodation(s) using the contact information below. 

   Bayer is an E-Verify Employer.      Location:United States : Massachusetts : Cambridge    Division:Pharmaceuticals   Reference Code: Contact Us   

  • Cambridge, Massachusetts, United States Novartis Full time $119,700 - $283,400

    Job Description Summary#LI-HybridInternal Title: Principal Scientist II or Senior Principal Scientist (DUAL LEVEL) This position will be based in Cambridge, MA and will not be located remotely.The Modeling & Simulation group within PK Sciences is looking for a Principal Scientist II or senior Principal Scientist level modeler, to develop and apply...


  • Cambridge, Massachusetts, United States Flagship Pioneering, Inc. Full time

    COMPANY DESCRIPTIONOur start-up is building a novel chemical discovery platform to reshape how we develop formulations at the molecular level. By combining artificial intelligence with a cutting-edge laboratory discovery pipeline, our interdisciplinary team will chart an unexplored chemical landscape, enabling breakthroughs in drug delivery, agrichemical...


  • Cambridge, Massachusetts, United States Flagship Pioneering, Inc. Full time $132,000 - $209,000

    COMPANY DESCRIPTIONOur start-up is building a novel chemical discovery platform to reshape how we develop formulations at the molecular level. By combining artificial intelligence with a cutting-edge laboratory discovery pipeline, our interdisciplinary team will chart an unexplored chemical landscape, enabling breakthroughs in drug delivery, agrichemical...


  • Cambridge, Massachusetts, United States Flagship Pioneering Full time

    What if... you could build a computational platform for scientific innovation to impact the creation of new technologies? The Role Pioneering Intelligence (PI) is a Flagship initiative focused on developing and harnessing AI/ML based platforms for innovative applications in life sciences and beyond. We are seeking a creative and talented machine...


  • Cambridge, Massachusetts, United States Bayer Full time $114,846 - $172,269

    At Bayer we're visionaries, driven to solve the world's toughest challenges and striving for a world where 'Health for all Hunger for none' is no longer a dream, but a real possibility. We're doing it with energy, curiosity and sheer dedication, always learning from unique perspectives of those around us, expanding our thinking, growing our capabilities and...


  • Cambridge, Massachusetts, United States Novartis Full time

    SummaryIn this role, you will spearhead strategic data governance projects to maximize the value of our scientific data assets, ensuring they are structured, interoperable, and ready for advanced analytics and AI applications. Working closely with scientific teams and IT partners, you will translate complex scientific workflows into scalable, efficient data...


  • Cambridge, Massachusetts, United States Flagship Pioneering Full time $160,000 - $206,000 per year

    What ifyou could join a rapidly growing company and play a critical role in bringing new medicines to patients through looking at and treating disease in a revolutionary way.What this position is all about:Cellarity is seeking an experienced and highly motivatedPrincipal Scientistwith expertise inFunctional GenomicsandNext Generation Sequencing (NGS)to play...


  • Cambridge, Massachusetts, United States Biogen Full time $172,800 - $198,000 per year

    About the Role:This application is for a 6-month student role from January - June 2026. Resume review begins in October 2025.As a co-op, your role will be pivotal in designing, developing, and applying innovative machine learning algorithms for small-molecule drug discovery. This position is a gateway to gaining firsthand experience in the fast-paced world...


  • Cambridge, Massachusetts, United States Biogen Full time $25 - $38

    About the Role:This application is for a 6-month student role from January - June 2026. Resume review begins in October 2025.As a co-op, your role will be pivotal in designing, developing, and applying innovative machine learning algorithms for small-molecule drug discovery. This position is a gateway to gaining firsthand experience in the fast-paced world...


  • Cambridge, Massachusetts, United States Microsoft Full time $120,000 - $200,000 per year

    We are seeking applicants in Microsoft Research New England (Cambridge, MA) for full-time Senior Researcher positions in Artifical Intelligence(AI), Machine Learning (ML), and related areas. We welcome applicants who (i) are close to graduation, (ii) recently graduated from a relevant PhD program, (iii) are completing a postdoctoral...