AI/ML Engineer, Computational Biology Specialist

5 days ago


Boston, Massachusetts, United States Flagship Ventures Full time
Company Overview:
Ampersand Biomedicines is a pioneering biotechnology company that develops innovative medicines with a wide range of therapeutic applications. Our team is dedicated to creating cutting-edge solutions that improve human health and quality of life.

Job Summary:
We are seeking an experienced AI/ML Engineer to join our team in developing a state-of-the-art platform for identifying and designing new multi-specific medicines. The ideal candidate will have a strong background in AI/ML and computational biology, with expertise in developing predictive models and workflows for ML/Generative AI model development.

Key Responsibilities:
Develop and maintain novel AI/ML predictive models for identifying drug targets and generating target-binding antibodies.
Lead the engineering efforts in creating and implementing methodologies and workflows for ML/Generative AI model development, LLM advancements.
Use publicly available and proprietary data to build AI pipelines and models for various use cases, including prediction of drug targets and generation of target-binding antibodies.
Actively participate in designing experimental approaches to generate relevant data and validate computational insights.
Develop computational frameworks to systematically characterize results from machine learning models from a biological perspective and provide feedback on improving the models.

Requirements:
PhD or M.S in computational sciences, such as computer science, physics, mathematics, or computational biology, with applications in biology.
Industry experience (2+ years for PhD and 5+ years for M.S preferred).
Expertise in at least one deep learning library, such as PyTorch, Tensorflow, JAX, or keras.
Coding experience in Python, Rust, C++, R, or other languages. Experience with cloud computing (AWS), MLOps, next-generation-sequencing (NGS), and single-cell genomics is a plus.
Strong organizational, analytical, and problem-solving skills.
Ability to thrive in a fast-paced, multidisciplinary, and rapidly growing biotech environment.

What We Offer:
Comprehensive, competitive healthcare and dental coverage through Blue Cross Blue Shield, vision coverage through VSP, family leave, paid time off, 401k retirement plan, disability and life insurance, and fully covered parking/commuter benefits.
A dynamic early-stage work environment and highly interdisciplinary, talented, and collaborative team.
Participation in an unprecedented opportunity to significantly impact the quality of life of patients by developing a targeted approach to delivering therapeutic molecules.
Professional growth opportunities through mentoring, training, immersion in cross-functional projects, and opportunities to learn and try new things.

About Flagship:
Flagship Pioneering is a bioplatform innovation company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability. Since its launch in 2000, Flagship has originated and fostered more than 100 scientific ventures, resulting in more than $90 billion in aggregate value. Flagship has been recognized twice on FORTUNE's "Change the World" list and has been named to Fast Company's annual list of the World's Most Innovative Companies. Learn more about Flagship at https://www.flagshippioneering.com/
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