Machine Learning Engineer, Biomolecule Design Specialist

4 weeks ago


Cambridge, Massachusetts, United States Flagship Ventures Full time
Job Summary

Flagship Ventures is seeking a highly skilled Machine Learning Engineer to join our team. As a key member of our cross-functional team, you will be responsible for developing and deploying machine learning models for sequence design.

The ideal candidate will have a strong background in machine learning, as well as experience in biotech industry or a record of scientific achievement. You will work closely with biologists, bioinformaticians, software developers, and automation engineers to contribute to the development of ML models for a range of therapeutic applications.

Key Responsibilities
  • Developing, training, and deploying machine learning models for Protein/RNA/DNA sequence design.
  • Implementing MLOps practices to streamline the model development and deployment process.
  • Collaborating with cross-functional teams to integrate ML models into the data pipelines for our labs.
  • Gathering and pre-processing public datasets with bioinformatics tools to pre-train ML models.
  • Implementing rigorous testing, documentation, and model benchmarking.
Requirements
  • Master's degree in computer science, computational biology, physics, or other quantitative disciplines.
  • Experience with MLOps practices and tools including version control, automated testing, and CI/CD.
  • Experience in at least one ML framework (PyTorch/TensorFlow/Jax) and robust experience in the Python data science ecosystem.
  • Experience with large language models (e.g. autoregressive LLMs) for biological sequences is a plus.
  • Familiarity with bioinformatics tools and databases for pre-processing and analyzing biological sequence data.
About Flagship Ventures

Flagship Ventures is a platform innovation company that invents and builds platform companies, each with the potential for multiple products that transform human health or sustainability.

Our team is committed to equal employment opportunity and welcomes applications from diverse candidates. We recognize that experience comes in many forms and skills are transferable, and we encourage candidates with a passion for machine learning and biomolecule design to apply.



  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    Flagship Ventures is seeking a skilled Machine Learning Engineer to join our team in the exciting field of biomolecule design. As a key member of our cross-functional team, you will be responsible for developing and deploying machine learning models for sequence design.The ideal candidate will have a strong background in machine learning, as well as...


  • Cambridge, Massachusetts, United States Flagship Pioneering, Inc. Full time

    Job Summary: Flagship Pioneering, Inc. is seeking a highly skilled Senior Scientist to join our team of computational immunologists and vaccine designers. As a key member of our team, you will leverage your expertise in machine learning and computational biology to design novel antigens and evaluate subsequent vaccine responses.Key Responsibilities:* Design,...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    Company OverviewFlagship Ventures is a pioneering technology company that leverages artificial intelligence to transform the scientific method. Our mission-driven team is dedicated to developing innovative solutions for the life sciences industry.The RoleWe are seeking a skilled Senior Biomolecule Design Engineer to join our team. This role will focus on...


  • Cambridge, Massachusetts, United States Flagship Pioneering, Inc. Full time

    About Apriori BioApriori Bio is a pioneering biotechnology company dedicated to developing a world protected against viral threats. Our unique technology platform, Octavia, enables us to survey the entire landscape of existing and potential variants to design new vaccines against the most threatening viruses. Octavia also informs public health policy in...


  • Cambridge, Massachusetts, United States Deep Genomics Full time

    About the RoleAs a Senior Machine Learning Engineer at Deep Genomics, you will be responsible for architecting scalable systems that accelerate our ability to translate AI insights into life-changing therapies. You will work at the intersection of machine learning and biology, pushing the boundaries of what's possible in drug discovery.Key...


  • Cambridge, Massachusetts, United States Cephable Full time

    About UsCephable is a pioneering force in assistive technology, dedicated to making digital experiences accessible and enjoyable for all. Our innovative software is free for private use and licensed to businesses as an employee accommodation and integrated feature set for digital products.Role OverviewWe're seeking a talented Machine Learning Engineer to...


  • Cambridge, Massachusetts, United States Cephable Full time

    About Us:Cephable is a pioneering assistive technology company dedicated to making digital experiences more accessible and enjoyable for people of all abilities. Our software is free for private use and licensed to businesses as an employee accommodation and integrated feature set for digital products.Role Overview:We are seeking a talented Machine Learning...


  • Cambridge, Massachusetts, United States Bot Auto Full time

    Job Title: Machine Learning Software EngineerThe successful candidate will join our perception team at Bot Auto and be responsible for designing and developing deep learning models to solve complex scene understanding, object detection, tracking, and prediction problems for autonomous trucks.Key Responsibilities:Research and develop deep learning models for...


  • Cambridge, Massachusetts, United States Capital One Full time

    About the RoleAs a Senior Manager, Machine Learning Engineering at Capital One, you will be part of an Agile team dedicated to productionizing machine learning applications and systems at scale. You will participate in the detailed technical design, development, and implementation of machine learning applications using existing and emerging technology...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    About the RoleFlagship Ventures is seeking a skilled Machine Learning Operations Engineer to join our team. This role will focus on building and maintaining private cloud infrastructure used to train large-scale machine learning models.You will be part of a dynamic, cross-functional team responsible for developing new artificial intelligence models that push...


  • Cambridge, Massachusetts, United States Google Full time

    Job SummaryGoogle is seeking a highly skilled Software Engineer III to join our Machine Learning team. As a key member of our team, you will design, develop, and deploy cutting-edge machine learning algorithms and systems that power Google's products and services.Responsibilities* Design and develop scalable machine learning systems and algorithms that meet...


  • Cambridge, Massachusetts, United States Harvard University Full time

    Job Title: Senior Machine Learning Engineer, Generative AI ApplicationsAbout the Role:We are seeking a highly skilled Senior Machine Learning Engineer to join our Digital Transformation team at Harvard Business School. As a key member of our team, you will be responsible for designing, developing, and deploying machine learning models to drive business...


  • Cambridge, Massachusetts, United States Harvard University Full time

    Job SummaryHarvard University is seeking a highly skilled Senior Machine Learning Engineer to join its Digital Transformation team. As a key member of the team, you will be responsible for developing and deploying machine learning models in production, managing the lifecycle of artificial intelligence algorithms, and collaborating with data scientists and...

  • Software Engineer III

    4 weeks ago


    Cambridge, Massachusetts, United States Google Full time

    About the RoleWe're seeking a highly skilled Software Engineer III to join our Google Research team. As a key member of our team, you will be responsible for developing the next-generation technologies that change how billions of users connect, explore, and interact with information and one another.ResponsibilitiesDesign, develop, test, deploy, maintain, and...

  • Software Engineer III

    4 weeks ago


    Cambridge, Massachusetts, United States Google Full time

    About the RoleAs a Software Engineer III at Google, you will be part of a team that develops cutting-edge technologies to improve the way people connect, explore, and interact with information. Our products handle vast amounts of data, and we're looking for engineers who can bring fresh ideas and expertise in areas like information retrieval, distributed...

  • AI Engineer Intern

    4 weeks ago


    Cambridge, Massachusetts, United States CBase AI Full time

    About CBase AI:We're a pioneering company in the construction industry, leveraging AI-first solutions to bridge data silos and enhance integrations between software systems. Our mission is to automate data updates, improve efficiency, and sustainability. We're seeking talented engineers to join our team and contribute to cutting-edge projects.Role...


  • Cambridge, Massachusetts, United States DeepRec Full time

    Deep Learning Expert Sought for Large Language Model ResearchLocation: Cambridge, Massachusetts, USADeepRec, a leading innovator in the field, is seeking a highly skilled Principal level Machine Learning Scientist specializing in Large Language Models (LLMs), to join our team in Cambridge, Massachusetts.Key Responsibilities:Develop and deploy large language...


  • Cambridge, Massachusetts, United States Flagship Ventures Full time

    Unlock the Power of Machine LearningWe are seeking a talented Machine Learning Scientist to join our team at Flagship Pioneering. As a key member of our innovation team, you will develop and deploy cutting-edge machine learning algorithms to drive scientific progress in health and sustainability.Key Responsibilities:Design and implement deep learning...


  • Cambridge, Massachusetts, United States Harvard University Full time

    About the Position:The Center for Computational Biomedicine at Harvard Medical School is seeking a highly skilled Machine Learning Engineer to join our team. As a key member of our interdisciplinary team, you will be responsible for developing and implementing large language models to advance our mission in leveraging data and computation to transform...


  • Cambridge, Massachusetts, United States Apple Full time

    Job Title: Senior Engineering Program Manager for Machine LearningAt Apple, we're committed to innovation and excellence. We're seeking a highly skilled Senior Engineering Program Manager to lead the development of our Machine Learning (ML) international locales expansion.Key Responsibilities:Lead high-profile Foundation Model programs, responsible for...