Computational Scientist

1 week ago


Santa Fe, New Mexico, United States Cadence Design Systems Full time

Company Overview:

Cadence Design Systems, through its division Cadence Molecular Sciences, stands at the forefront of computational molecular design. We specialize in providing cutting-edge software solutions, consulting services, and the Orion platform, a fully integrated cloud-native software-as-a-service solution for molecular modeling. Our innovative approach enables seamless computation and storage, along with advanced tools for data visualization, sharing, and analysis, empowering advancements in pharmaceuticals, biologics, agrochemicals, and flavors and fragrances.

Position Overview:

In this role, you will engage with the most sophisticated large-scale computing platform, Orion, which is built on Amazon Web Services. Your responsibilities will involve pioneering work in cloud computing, Python/C++ programming, and advanced molecular dynamics simulation techniques to explore the intricate mechanisms of passive membrane permeability in drug-like compounds. Your contributions will significantly influence drug discovery research and will be utilized by numerous pharmaceutical and biotech firms globally.

Key Responsibilities:

  • Develop state-of-the-art scientific software tools tailored for drug discovery.
  • Conduct 3D molecular modeling, including both ligand-based and structure-based design.
  • Generate bio-active conformers and model molecular properties and interactions in three dimensions.
  • Optimize molecular structures in situ and compute free energy values.
  • Assist clients in resolving their drug discovery challenges.

Technologies Utilized:

  • Programming Languages: Python, C++, Java, C#
  • Development Tools: CMake, SWIG, Git, Jupyter, Conda, Pip, Atlassian tools (JIRA, Bitbucket, Fisheye)
  • Multi-platform development environment
  • Orion: A cloud platform for high-performance scientific computing

Qualifications:

  • Master's or PhD in Physics, Chemistry, Computational Biology, or a related discipline.
  • A strong desire to learn and adapt to new technologies and concepts.
  • 3-5+ years of experience in scientific development using Python and/or C++.
  • Familiarity with molecular modeling and drug discovery literature.
  • Comprehensive understanding of professional software development practices and tools.

Preferred Attributes:

  • Team-oriented mindset.
  • Meticulous attention to detail.
  • Strong communication skills.
  • Innovative thinking in scientific and technical domains.
  • Curiosity and creativity in problem-solving.
  • Experience with large-scale software projects.
  • Ability to write new code as needed while leveraging existing code effectively.
  • Capability to work within development timelines, balancing feature implementation and delivery deadlines.


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