Microscopy Image Analysis Intern

1 month ago


Portland, Oregon, United States The Jackson Laboratory Full time
Job Summary

We are seeking a highly motivated student intern to join our team at The Jackson Laboratory, a leading biomedical research institution. The successful candidate will work under the supervision of a Sr. Scientific Software Engineer to analyze biomedical images using deep learning techniques.

Key Responsibilities
  • Annotate data to create a training dataset for deep learning models
  • Apply state-of-the-art deep learning techniques, including transfer learning, to create task-specific models
  • Scale transfer learning to operate on Whole Slide Images (WSI) using parallelization
  • Develop a strategy to apply the probability output of deep learning networks to find high-probable regions of interest
  • Investigate how fine-tuning hyperparameters improves results
  • Use JAX HPC resources to retrain all weights of the full network
  • Investigate running classification on low-power devices, such as RaspberryPi
Desired Qualifications
  • Enrolled in a college or university program
  • Pursuing a Master's degree in computer science, biology, electrical engineering, or related field
  • Experience with PyTorch or other ML frameworks
  • Experience with programming languages (i.e. Python, Java, Typescript)
  • Interest and familiarity with ML and/or Image Analysis
  • Familiarity with CUDA programming is a plus
About The Jackson Laboratory

The Jackson Laboratory is an independent, nonprofit biomedical research institution with a National Cancer Institute-designated Cancer Center and nearly 3,000 employees in locations across the United States, Japan, and China. Our mission is to discover precise genomic solutions for disease and empower the global biomedical community in the shared quest to improve human health.

We are committed to equal employment opportunities and welcome applications from a diverse mix of educational backgrounds and experiences.



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