Senior Software Engineer II, High Performance Computing Backend
4 weeks ago
At Nautilus, we have a big and important mission: improve the health of millions by unleashing the potential of the proteome to accelerate drug development and enable a new world of precision and personalized medicine. We are developing a single-molecule protein analysis platform of unprecedented sensitivity, scale, and ease of use that we believe will democratize access to the proteome – one of the most dynamic and valuable sources of biological insight. To accomplish this, we are pursuing hard scientific problems with an entrepreneurial mindset and creating a world-class team of builders, innovators, and dreamers across a wide range of disciplines.
Step into a world where science meets software, and your expertise shapes the future of proteomics. We are inviting applications for the position of Senior Software Engineer II, High Performance Computing Backend to join the dynamic Proteomics Pipeline and Portal (P3) team. Within P3, you'll be at the helm of designing, constructing, deploying, and nurturing our Cloud Proteome Decode System. We're seeking an individual with a razor-sharp focus on detail and a relentless drive to excel. Navigating demanding timelines and crafting strategies that align with corporate objectives should be second nature to you.
As Senior Software Engineer II, we anticipate your pivotal role in shaping the team's ethos and exhibiting technical leadership. This isn't a place for mere task executors - we need an architect who can guide us in constructing the future of proteomics If the thought of trying to decode at scale tens of millions to billions of proteins in a high-performance computing environment sounds awesome, we want you If you think the challenge of how simulate an instrument to help qualify the speed, accuracy, and cost of a cloud decode environment sounds tough but doable, we want you We want you to come with ideas and take our protein decode system to the next level in scalability and maintainability. Because we’re small team, we want you to own this part of our product portfolio; you have a huge opportunity to be part of a growing engineering organization.
This position will report to a Principal Engineer of Software Engineering and is located in Seattle, WA.
Responsibilities
Subject matter expert in high performance computing, preferably using technologies like AWS Batch and AWS cloud technologies including AWS Lambdas, SNS, SQS, and Athena.
Build out observability and analytics, including use of Datadog (or similar) and data lakes.
Responsible for continuing to optimize, build, and deliver a stable, cost effective, and maintainable HPC environment for both production and R&D cloud-based protein decodes in a very small team.
Responsible for evaluating options to bring the cloud components locally for rapid development using systems such as LocalStack.
Responsible for balancing team size, technology complexity, and product features, including triage, support, and planning.
Work closely and cross-functionally with representatives of other disciplines, including Bioinformatics, Product, Support, and Instrumentation.
Requirements
A minimum of 5+ years of relevant experience in scalable cloud solutions preferably in high performance computing environments
A bachelor’s degree in computer science or similar related field is required.
2+ years with Python (our primary language)
3+ years in another adjunct language such as JS, TS, C++, C
5+ years working in a cloud environment, preferably AWS or a hybrid cloud with AWS.
3+ years working in small teams (1-5 people)
Nautilus Team Culture
We are curious go-getters: this is a team of life-long learners who aren’t afraid to tackle the big challenges and we embrace the journey
We are detail oriented: we do great science by working smart & with diligence where we learn from our trials and mistakes
We are easy to work with: we want our workplace to be one where everyone can share their perspective and be treated with respect and kindness
Compensation Range: $195K - $215K
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