Microscopy Image Analysis Student Intern

Found in: Lensa US P 2 C2 - 2 weeks ago

Bar Harbor, United States The Jackson Laboratory Full time
Summary

Are you a graduate student interested in image analysis using deep learning methods? The Computational Sciences department is seeking a student intern who will work under the supervision of a Sr. Scientific Software Engineer to find features in microscope images using deep learning with the goal of identifying parts of the eye. Over 12-14 weeks, the intern will work closely with the computational science and imaging sciences teams to ensure that the project is a success.

About Your JAX Internship Experience

Join peers selected from educational institutions across the country for a summer of professional growth and career exploration. As a JAX Intern, you will receive a dedicated mentor in your department and connect with your fellow interns through JAX-sponsored activities.

The ideal start date for this position is by June 3, 2024.

Key Responsibilities
  • Apply Transfer learning approaches & pre-trained ResNet XX to Histo-Path problems
  • Develop a strategy to apply the probability output of YOLO networks to identify the optical nerve in eyeball sections by:
    • Generating training set based on the CS/MS group's specifications, ideally within the capabilities of JAX Image Tools software (Slidescropper)
    • Using HPC resource to retrain all weights of the full network
    • Investigating on how exchanging different Resnets improves results
    • Converting the script to use Cuda to classify test samples
    • Investigating running classification on low-power devices, such as RaspberryPi
Desired Qualifications

JAX encourages applications from a diverse mix of educational backgrounds and experiences. Preferred qualifications include:
  • Must be enrolled in a college or university program
  • Pursuing a Master's degree in computer science, biology, electrical engineering, or related field
  • Experience with Pytorch or other ML framework
  • Experience with programming languages (i.e. Python, Java, Typescript)
  • Interest and familiarity with ML and/or Image Analysis
  • Familiarity with CUDA programming is a plus


The salary range is $17.50 - $25.00. Hourly rate will be determined based on qualifications and experience.

#LI-MJ1

#CA-MJ4

About JAX:

The Jackson Laboratory is an independent, nonprofit biomedical research institution with a National Cancer Institute-designated Cancer Center and nearly 3,000 employees in locations across the United States (Maine, Connecticut, California), Japan and China. Its mission is to discover precise genomic solutions for disease and empower the global biomedical community in the shared quest to improve human health.

Founded in 1929, JAX applies over nine decades of expertise in genetics to increase understanding of human disease, advancing treatments and cures for cancer, neurological and immune disorders, diabetes, aging and heart disease. It models and interprets genomic complexity, integrates basic research with clinical application, educates current and future scientists, and provides critical data, tools and services to the global biomedical community. For more information, please visit www.jax.org.

EEO Statement:

The Jackson Laboratory provides equal employment opportunities to all employees and applicants for employment in all job classifications without regard to race, color, religion, age, mental disability, physical disability, medical condition, gender, sexual orientation, genetic information, ancestry, marital status, national origin, veteran status, and other classifications protected by applicable state and local non-discrimination laws.

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