Senior Software Engineer GPU and Acceleration

3 days ago


Pleasanton, California, United States SequLITE Genomics US, Inc. Full time

SequLITE Genomics US, Inc.

We are a leading life science company developing an NGS platform to enable sequencing for everyone. Our goal is to provide cutting-edge solutions for high-throughput sequencing and analysis. We are looking for a highly skilled Staff/Sr. Staff Software Engineer, GPU and Acceleration to join our product development team.

About the Job
  • The position will be responsible for leading the design, development, and optimization of image processing and basecall algorithms and software solutions tailored for NGS platforms.
  • You will collaborate closely with cross-functional teams to integrate advanced imaging capabilities into our NGS systems, enabling high-throughput sequencing and analysis.
Key Responsibilities:
  • Lead the design and implementation of real-time image processing and basecall algorithms and software solutions to support NGS workflows, including image acquisition, quality control, and data analysis.
  • Collaborate with hardware engineers to optimize imaging systems for high-throughput sequencing applications.
  • Conduct performance analysis and optimization of image processing algorithms to enhance accuracy, efficiency, and scalability.
  • Stay current with the latest advancements in image processing, computer vision, and machine learning technologies, and apply cutting-edge techniques to solve challenges in NGS.
  • Mentor and guide junior engineers, providing technical leadership and fostering a culture of innovation and excellence.
  • Collaborate with product management and customer-facing teams to understand customer requirements and translate them into technical specifications.
  • Contribute to the development of tools, frameworks, and libraries to support image processing workflows and enhance developer productivity.
Requirements:
  • Masters or Ph.D. degree in Computer Science, Electrical Engineering, Bioinformatics, Computational Biology, Statistics, Physics, Mathematics, or related field.
  • 10+ years experience in C++ programming: Expertise in writing efficient, reliable, and maintainable C++ code for real-time processing.
  • 7+ years experience with CUDA programming on high-end platforms.
  • Experience with UNIX / POSIX programming, Windows, and cross-compatible platforms.
  • CPU/GPU performance profiling: 5+ years experience in performance profiling and optimization of CPU and GPU-based systems.
  • Experience with Camera Real-Time Data Acquisition Systems, including GPUDirect.
  • Experience with the full lifecycle of development, including product release.
  • Familiarity with NGS technologies and workflows, including sequencing instruments, sample preparation, and data analysis.
  • Strong analytical and problem-solving skills, with the ability to tackle complex technical challenges.
  • Excellent communication and collaboration skills, with the ability to work effectively in a cross-functional team environment.
Estimated Salary: $160,000 - $220,000 per year

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