Senior Automation Engineer

3 weeks ago


San Diego, California, United States Molecular Assemblies, Inc. Full time
About Us

Molecular Assemblies, Inc. is a pioneering life sciences company that is revolutionizing the field of DNA synthesis technology. Our innovative approach enables advances in industrial synthetic biology, precision medicine, and emerging applications such as DNA data storage, nanomachines, and bio-based electronics.

Job Summary

We are seeking a highly experienced Senior Automation Engineer to join our innovative team. This role will primarily focus on automating existing workflows, such as NGS sample preparation, sample processing and handling. The successful candidate will be responsible for designing, developing, and implementing cutting-edge automation solutions to support our dynamic research environment, working closely with scientists and engineers to enable rapid experimentation and process optimization.

Responsibilities:
  • Collaborate with cross-functional teams to design, develop, and deploy end-to-end laboratory automation solutions.
  • Create, optimize, and maintain high-throughput workflows using liquid-handling robots and integrated automation workcells.
  • Expand the scope of existing automation by introducing new functionalities and evaluating novel devices and technologies.
  • Troubleshoot laboratory automation systems, working with internal experts and external vendors to perform root cause analysis and resolve issues.
  • Document best practices, train end users, and support independent execution of automated workflows.
  • Partner with IT and Data Science teams to automate data flows, ensuring data integrity and efficient data management.
  • Assist in the design and implementation of integrated platforms to provide comprehensive automation solutions.
  • Engage in scientific discussions, present process improvements, and contribute to scientific articles and papers.
Qualifications:
  • Ph.D. with 2+ years, M.S. with 4+ years, or B.S. with 6+ years of hands-on experience in laboratory automation, focusing on liquid-handling robots and integrated automation workcells.
  • Experience integrating systems into high-throughput production environments.
  • Experience with scheduling software (e.g., Green Button Go, Cellario, Momentum) and liquid-handling robots (e.g., Hamilton, Tecan, Beckman Coulter). Opentrons experience is a plus.
  • Proven track record in automating laboratory workflows within the biotechnology or pharmaceutical industries.
  • Experience migrating biological or biochemical assays onto automated systems and gathering user requirements for complex workflows.
Health & Benefits at MAI:
  • Medical, dental & vision plans offered
  • 401k plan
  • Generous stock options
  • Paid vacation days
  • Bonus eligible role


  • San Diego, California, United States VIA Technical (now Eliassen Group) Full time

    Job Title: Senior Automation EngineerJob Type: 9-Month ContractCompany Overview:We are partnering with a leading Biotech company in San Diego to find a seasoned Senior Automation Engineer for a high-profile project. This onsite, 9-month contract role is ideal for a skilled engineer looking to make a significant impact in a fast-paced, innovative...


  • San Diego, California, United States JSAT AUTOMATION INC Full time

    Job OverviewJSAT Automation is seeking a highly skilled Automation and Validation Engineer to join our team. As a key member of our engineering team, you will be responsible for designing and developing manufacturing control systems in support of process operations.Key Responsibilities:Design and develop manufacturing control systems in support of process...


  • San Diego, California, United States ManpowerGroup Full time

    Job SummaryManpowerGroup is seeking a highly skilled Senior Automation Test Engineer to join our team. As a key member of our CI team, you will be responsible for monitoring and triaging our CI system, ensuring the smooth operation of our automation test lab, and collaborating with the development team to resolve issues.ResponsibilitiesMonitor daily test...


  • San Francisco, California, United States insitro Full time

    About the RoleWe are seeking a highly skilled Senior Automation Engineer to join our team at insitro. As a key member of our Automation team, you will collaborate with scientists, software engineers, and microscopy engineers to design, develop, and qualify new workcells and liquid handling protocols to enable new platform capabilities.As a Senior Automation...


  • San Francisco, California, United States insitro Full time

    About the RoleWe are seeking a highly skilled Senior Automation Engineer to join our team at insitro. As a key member of our Automation team, you will collaborate with scientists, software engineers, and microscopy engineers to design, develop, and qualify new workcells and liquid handling protocols to enable new platform capabilities.As a Senior Automation...


  • San Diego, California, United States Oura Full time

    Job Title: Senior Hardware Test Automation EngineerWe are seeking a highly skilled Senior Hardware Test Automation Engineer to join our team in San Diego. As a key member of our Hardware testing team, you will play a crucial role in the development and integration of new features into our products.Key Responsibilities:Design and implement HW test automation...


  • San Diego, California, United States JSAT AUTOMATION INC Full time

    Job SummaryWe are seeking a highly skilled Senior Building Systems Engineer to join our team at JSAT AUTOMATION INC. As a key member of our engineering team, you will be responsible for designing, planning, and managing all phases of projects to ensure customer satisfaction.Key ResponsibilitiesDevelop and conduct functional test procedures for HVAC systems,...


  • San Francisco, California, United States F. Hoffmann-La Roche Gruppe Full time

    Job Title: Senior Automation EngineerThe PositionAs a key member of the Site Operations organization, the Senior Automation Engineer will provide technical support to ensure the safe, efficient, and reliable operation of site facilities, utilities, and equipment at Genentech's South San Francisco and Dixon sites.The Senior Automation Engineer will act as a...


  • San Francisco, California, United States Genentech Full time

    Job Title: Senior Automation EngineerGenentech is seeking a highly skilled Senior Automation Engineer to join our Site Operations organization. As a key member of the Facilities Systems & Plant Engineering (FSPE) team, you will provide technical support to ensure the safe, efficient, and reliable operation of site facilities, utilities, and...


  • San Francisco, California, United States Powell Industries Full time

    About the RoleWe are seeking a highly skilled and motivated individual to join our Powell Automation Division as a Senior Automation Engineer. As a key member of our team, you will be responsible for designing, developing, and implementing automation solutions for our clients.Key ResponsibilitiesDesign and develop automation solutions using various...


  • San Francisco, California, United States Genentech Full time

    Job Title: Senior Automation EngineerGenentech is seeking a highly skilled Senior Automation Engineer to join our Site Operations team. As a key member of our Facilities Systems & Plant Engineering (FSPE) team, you will provide technical support to ensure the safe, efficient, and reliable operation of site facilities, utilities, and...


  • San Francisco, California, United States Genentech Full time

    Job Title: Senior Automation EngineerGenentech is seeking a highly skilled Senior Automation Engineer to join our Site Operations team. As a key member of our Facilities Systems & Plant Engineering (FSPE) team, you will provide technical support to ensure the safe, efficient, and reliable operation of site facilities, utilities, and...


  • San Diego, California, United States NXP Semiconductors N.V. Full time

    Job SummaryWe are seeking a highly skilled Senior ASIC Design Automation Engineer to join our MCU/MPU Engineering organization. As an expert in VLSI CAD software development, you will lead a team of automation experts to architect, design, and develop state-of-the-art VLSI CAD SW tools and flows.Key ResponsibilitiesDevelop and manage multiple automations...


  • San Francisco, California, United States Roche Holdings Inc. Full time

    Job Title: Senior Automation EngineerGenentech is seeking a highly skilled Senior Automation Engineer to join our Site Operations team. As a key member of our Facilities Systems & Plant Engineering (FSPE) team, you will be responsible for ensuring the safe, efficient, and reliable operation of site facilities, utilities, and equipment at our South San...


  • San Jose, California, United States MILLENNIUMSOFT Full time

    Job Title: Senior Automation EngineerAt MillenniumSoft, we are seeking a highly skilled engineer to automate NGS assay workflows on robotic liquid handling platforms. The ideal candidate will play a key role in designing, prototyping, and validating an automated fluid handling instrument for RhapsodyTM, Becton Dickinson's next generation platform for highly...


  • San Jose, California, United States MILLENNIUMSOFT Full time

    Job Title - Senior Automation EngineerLocation - San Jose, CADuration – 6+ Months ContractTotal Hours/week 1st ShiftDescription:MILLENNIUMSOFT is seeking a highly skilled engineer to automate NGS assay workflows on robotic liquid handling platforms. The ideal candidate will play a key role in designing, prototyping, and validating an automated fluid...


  • San Juan Capistrano, California, United States Quest Diagnostics Incorporated Full time

    Job Title: Senior Automation EngineerWe are seeking a highly skilled Senior Automation Engineer to join our team at Quest Diagnostics Incorporated. As a key member of our laboratory operations, you will be responsible for the proper operation, troubleshooting, repair, and preventive maintenance of advanced equipment and automation systems.Key...


  • San Jose, California, United States MILLENNIUMSOFT Full time

    Job Title - Senior Automation EngineerLocation: San Jose, CADuration: 6+ Months ContractTotal Hours/week:1st ShiftDescription:Millenniumsoft is seeking a highly skilled engineer to automate NGS assay workflows on robotic liquid handling platforms. The ideal candidate will play a key role in designing, prototyping, and validating an automated fluid handling...


  • San Jose, California, United States MILLENNIUMSOFT Full time

    Job Title - Senior Automation EngineerLocation: San Jose, CADuration: 6+ Months ContractTotal Hours/week:1st ShiftDescription:Millenniumsoft is seeking a highly skilled engineer to automate NGS assay workflows on robotic liquid handling platforms. The ideal candidate will play a key role in designing, prototyping, and validating an automated fluid handling...


  • San Diego, California, United States Molecular Assemblies, Inc. Full time

    About UsMolecular Assemblies, Inc. is a pioneering life sciences company that is revolutionizing the field of DNA synthesis. Our innovative technology, Fully Enzymatic SynthesisTM (FESTM), enables the production of high-quality, sequence-specific DNA. This breakthrough approach has far-reaching implications for industrial synthetic biology, precision...