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Computational Software Engineer

2 months ago

Santa Fe, New Mexico, United States Cadence Design Systems Full time

Company Overview:

Cadence Design Systems, through its division Cadence Molecular Sciences, stands at the forefront of computational molecular design. Our innovative solutions encompass rapid, robust, and scalable software, consulting services, and the Orion platform, a fully integrated cloud-native software-as-a-service solution for molecular modeling. Orion combines limitless computation and storage with advanced tools for data sharing, visualization, and analysis, enabling significant advancements in pharmaceuticals, biologics, agrochemicals, and flavors and fragrances.

Position Overview:

In this role, you will engage with cutting-edge technologies in cloud computing, Python/C++ development, and advanced molecular dynamics simulation techniques. Your work will focus on exploring the mechanistic aspects of passive membrane permeability of drug-like compounds, contributing to impactful drug discovery research utilized by pharmaceutical and biotech firms globally.

Key Responsibilities:

  • Develop state-of-the-art scientific software tools tailored for drug discovery.
  • Engage in 3D molecular modeling, including both ligand-based and structure-based design.
  • Generate bio-active conformers and model molecular properties and interactions in three dimensions.
  • Optimize molecular structures in situ and compute free energies.
  • Assist clients in resolving their drug discovery challenges.

Technologies Utilized:

  • Programming Languages: Python, C++, Java, C#
  • Development Tools: Cmake, swig, git, Jupyter, conda, pip, Atlassian tools (JIRA, bitbucket, Fisheye)
  • Environment: Multi-platform development
  • Platform: Orion, a cloud-based solution for high-performance scientific computing

Qualifications:

  • Master's or PhD in Physics, Chemistry, Computational Biology, or a related discipline.
  • A strong desire to learn and adopt new technologies and methodologies.
  • 3-5+ years of experience in scientific development using Python and/or C++.
  • Familiarity with molecular modeling and drug discovery literature.
  • Comprehensive understanding of professional software development practices and tools.

Preferred Attributes:

  • Collaborative mindset and teamwork skills.
  • Meticulous attention to detail.
  • Strong communication abilities.
  • Innovative thinking in scientific and technical domains.
  • Curiosity and creativity in problem-solving.
  • Experience with large-scale software projects.
  • Capability to write new code as needed while leveraging existing code effectively.
  • Ability to manage development schedules, balancing feature implementation with delivery timelines.