Senior Software Engineer

4 weeks ago


Austin, Texas, United States University of Texas at Austin Full time

As a Senior Software Engineer at the University of Texas at Austin, you will design and implement software tools for image segmentation, annotations, reconstructions, and biophysical modeling at the molecular, synaptic, dendritic, and circuit levels, from nanoscale images.

With a background in cell biology and a proven ability to develop software solutions to prescient questions in the field, you will conduct computational experiments on data sets to be used in publications.

You will enhance, recode, and redevelop the lab's primary software product Reconstruct to PyReconstruct using modern programming languages and data structures.

Using deep-learning with emergent technologies, you will create polygon generating surfaces (e.g. Neuroglancer, flood-filling networks, CDeep3M).

You will develop graphical user interfaces (GUIs) that expand throughput and quantitative analysis by experimental and computational neuroscientists.

Network with scientists throughout the world:

Attend conferences, visit other sites, host hackathons, participate in joint endeavors, and develop open-source tools.

You will integrate developed software into an NSF NeuroNex Technology Hub tasked with sharing computational tools and data at the Texas Advanced Computing Center.

Maintain up-to-date GitHub source code repositories for all software development.

Analyze database strategies to manage large quantities of metadata, images, reconstructions, quantitative analyses, etc.

Prepare relevant components of manuscripts for scientific journals on new findings and technical developments.

Write own grant proposals and assist with general lab grant proposals.

Mentor and train staff members on computational analyses using newly implemented software. In addition, mentor and train students in computational programming and data analysis.



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