Senior/Staff Scientist, Data Science Berkeley, CA

At Glyphic Biotechnologies, we plan create the protein revolution for which scientists and researchers have been waiting. We are developing a massively parallel, single-molecule proteome sequencing platform that will transform life science discovery and usher in a new era of insights into human biology and disease. To date, we have raised $50M from venture partners and non-dilutive grant funding to achieve our vision of next generation proteome sequencing.
Glyphic is seeking a highly motivated and experienced Senior/Staff Data Scientist to assist in the advancement of our cuttingedge single molecule proteome sequencing platform which has the potential to transform how we understand biology and develop new medicines.
We're looking for a Senior Data Scientist who's excited about solving complex, realworld problems with cuttingedge technology. This is a hybrid role and with expectations to spend as much as ~20% of your time onsite with the team in Berkeley, CA ( average) in service of a more complete understanding of Glyphics technology and calibration with the onsite research team. This role will require some flexibility for additional collaboration projects require.
Data Analysis and Insight Generation :
Design and implement novel algorithms to analyze proteomics data that no one has ever seen before.
Develop and optimize algorithms for analyzing highdimensional chemistry and NGS data, including single cell, spatial data, and LCMS data outputs
Build models that reveal how parameters and molecular interfaces drive outcomes, including surface interactions and moleculetarget binding.
Design and execute biostatistical analyses using Python and/or R to uncover significant trends, model experimental outcomes, and inform datadriven decisionmaking.
Help define metrics and visualizations that clarify highdimensional relationships for scientists and stakeholders.
Partner with wet lab, hardware, and software teams to translate experimental goals into computational strategies.
Pipelines and Automation :
Create ETL pipelines that clean, normalize, and integrate diverse datasets (sequencing reads, LCMS spectra, metadata) into analysisready formats.
Combine offtheshelf pipelines (basecalling, variant calling, deconvolution) with custom scripts to deliver endtoend solutions.
Continuously improve throughput and data quality by automating QC steps and integrating feedback from experiments.
Establish best practices for code quality, testing, and deployment that will scale with our growing team.
PhD in Computer Science, Bioinformatics, Computational Biology, Biostatistics or related field with 4+ (Senior) or 6+ (Staff) years of handson experience.
Competency in chemistry data science (e.g., interpreting LCMS data, utilizing deconvolution tools, understanding surface chemistry and moleculetarget interactions).
Expertise in Python and/or R for biostatistical analysis, including data wrangling, statistical modeling, and visualization of highdimensional experimental results.
Experience designing ML models for experimental data and deploying pipelines (Snakemake, Nextflow).
Familiarity with ML frameworks (PyTorch, TensorFlow) and data science libraries (pandas, numpy, scipy).
Experience building automated data pipelines and infrastructure for scalable analysis (cloud, Docker/Kubernetes).
Experience with cloud platforms (AWS, GCP, or Azure) and containerization tools (Docker, Kubernetes).
Proficiency with data visualization tools (matplotlib, seaborn, plotly) and Jupyter notebooks.
Familiarity with version control (git) and pipeline workflow systems (Snakemake, Nextflow, etc.)
Ability to work in performant languages (C++, Rust, Julia, or CUDA).
Ability to develop solutions that optimize the utilization of largescale data storage, cloud processing infrastructure, and distributed computing.
Deep learning experience with timeseries data, signal processing, or sequence modeling.
Ability to build and deploy scalable ML pipelines using PyTorch/TensorFlow for realtime protein sequence analysis.
Experience with MLOps tools and practices for model deployment and monitoring.
Experience building commercially successful life science tools that other scientists actually use and love.
Excellent interpersonal skills capable of building strong relationships and communicating effectively with stakeholders at all levels.
High emotional and analytical intelligence able to navigate complex team dynamics, partnerships, and challenges with creativity and logic.
Resourceful adaptability operates with urgency, remains flexible in evolving environments, and thrives in ambiguity.
Flexible hybrid schedule with quarterly team gatherings
Bridge the gap between cuttingedge research and practical applications
Employee Stock Option Plan
Employer Retirement Contributions to 401(k)
Office Snacks and Beverages
We celebrate diversity and are committed to creating an inclusive environment for all employees. Individuals seeking employment at Glyphic Biotechnologies are considered without regard to race, color, religion, national origin, age, sex, marital status, ancestry, physical or mental disability, veteran status, gender identity, or sexual orientation.
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