Bioinformatics Engineer

4 weeks ago

Cambridge, United States Catalytic Data Science Full time
Job DescriptionJob DescriptionSalary:

Bioinformatics Engineer (SEII)


About Catalytic Data Science (CDS):


 REMOTE OPPORTUNITY 


Catalytic Data Science is a groundbreaking cloud R&D platform designed to integrate the volumes of scientific resources, data, and analytic tools while providing the ability to network with colleagues in one secure and scalable environment.   By enabling R&D teams to work more collaboratively and improving productivity company-wide, the Catalytic platform helps teams achieve key R&D milestones faster and with greater accuracy.  Our customers are passionate about making the world a better place, and we are inspired by the opportunity to help them.

 

The Role:

Catalytic is looking for a proactive, driven, and talented Bioinformatics Engineer who is motivated by the challenge to deliver highly available, secure, and scalable enterprise bioinformatics software. This mid-level position is a key member of our engineering team who will enable us to continuously deliver quality bioinformatics and visualization software. The ideal candidate would have experience securing, augmenting, and containerizing open-source analytics and visualization software for deployment on the Catalytic Platforms.

 

Our nimble teams work closely to rapidly build and deploy products. We are seeking someone who can communicate clearly and balance business objectives with product quality. You will work with other application engineers to understand the science, product, and business needs, provide expertise around the platform and AWS cloud service development.

 

If you are a proven software engineer, looking for opportunities to further grow your bioinformatics skills while contributing to a world-class team, we definitely want to talk with you.

 

 

You have extensive knowledge in:

  • Containerization and container security
  • Biology and bioinformatics
  • Amazon Web Services

 

 

What You'll Do:

  • Identify dependencies and containerize selected open-source analytics
  • Work with the Science team to determine inputs, outputs, and parameters of analytics
  • Work closely with UX / UI team to design clear interfaces to work seamlessly with back-end services
  • Test, troubleshoot, debug throughout the application development process including assisting customers in determining causes of failed pipelines
  • Work closely with other backend engineers to improve all aspects of the analytics platform including the developments/testing phase, error handling, cost and speed optimizations, usage reporting, etc.
  • Develop a high-level understanding of all parts of the platform and offer assistance when necessary

 

What You Know:

  • BS in science, computer science or related engineering or math discipline and 3+ years related work experience (or equivalent work experience in lieu of degree)
  • Experience containerizing (Docker) and securing open-source applications
  • Extensive experience with Python
  • Knowledge of R is a plus; knowledge in creating rShiny web apps is a double-plus
  • Knowledge of Java is a plus
  • Experience using Bash/Linux
  • Experience using Amazon Web Services
  • Experience making mistakes
  • Experience being part of a development team
  • Experience collaborating with a Product Owner, UX designer, or Requirements Analyst, etc.
  • Excellent communication (written and verbal), time management, interpersonal, and team participation skills

 

 In compliance with federal law, all persons hired will be required to verify identity and eligibility to work in the United States and to complete the required employment eligibility verification document form upon hire.

  • Scientist I, Bioinformatics

    4 weeks ago

    Cambridge, United States Sarepta Therapeutics Full time

    The Scientist I, Bioinformatics works closely with several groups within Sarepta’s Research and Development department. The Scientist I, Bioinformatics is part of the Genomics and Data Sciences team and plays a critical role in supporting Discovery Biology to advance our portfolio of RNA, gene therapy, and CRISPR-based gene editing therapies to treat...

  • Sr. Bioinformatics Scientist

    1 month ago

    Cambridge, United States Catalytic Data Science Full time

    Job DescriptionJob DescriptionSalary: Sr. Bioinformatics Scientist About Catalytic Data Science (CDS): REMOTE OPPORTUNITY Catalytic Data Science is a groundbreaking cloud R&D platform designed to integrate the volumes of scientific resources, data, and analytic tools while providing the ability to network with colleagues in one secure and scalable...

  • Senior Software Engineer, GA4GH

    1 day ago

    Cambridge, United States Broad Institute Full time

    General information Location Cambridge, MA Ref # 39189 Job Family Research Date published 30-Apr-2024 Time Type Full time Description & Requirements Job Description The Global Alliance for Genomics and Health (GA4GH) is an international open-science organization dedicated to creating genomic data standards for the benefit of human health and medicine. Formed...

  • Pharma Lab IT Support Engineer

    2 weeks ago

    Cambridge, United States Sailotech Full time

    Position: Pharma Lab IT Support Engineer Location: Cambridge MA (Onsite) Duration:12 months Required Skills: BS in Science, Computer/Information Technology, Bioinformatics or Engineering. Six plus years of progressively advancing experience in: Pharmaceutical operations or software development in pharmaceutical environment. Process automation...

  • Network Engineer with Pharma Domain

    6 days ago

    Cambridge, United States Sailotech Full time

    Position: Network Engineer Location: Cambridge, MA (Onsite) Responsibilities: •In-depth knowledge of the science and computerized systems involved in the design, installation, commissioning, and validation/qualification of computerized systems as applied to pharmaceutical environment. •Troubleshooting with vendors and end users on system integration with...

  • Senior Scientist, Computational Biology

    10 hours ago

    Cambridge, United States Sana Biotechnology Full time

    About the role The Computational Biologist will work closely with scientists and other computational biologists to analyze NGS genomics data and develop bioinformatics methods to solve exciting and challenging problems in cell and gene therapy, immunology, and stem cell biology. You will develop workflows from raw sequencing data to variant calling and...

  • Director - Neuroscience Next Generation Therapeutics

    3 weeks ago

    Cambridge, United States Eli Lilly and Company Full time

    At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities...

  • Senior Scientist, Computational Biology

    2 days ago

    Cambridge, Massachusetts, United States Sana Biotechnology Full time

    About the roleThe Computational Biologist will work closely with scientists and other computational biologists to analyze NGS genomics data and develop bioinformatics methods to solve exciting and challenging problems in cell and gene therapy, immunology, and stem cell biology. You will develop workflows from raw sequencing data to variant calling and...

  • Associate Scientist II, Genomics Data

    1 month ago

    Cambridge, Massachusetts, United States AbbVie Full time

    Job Description Key Responsibilities   Engineer, maintain, & improve upon pipeline code base for bioinformatics processing & analysis of various genomics data types. Enable code reuse across different Linux environments / computing architecture deployed across research sites. Facilitate internal & external data availability to...

  • Director - Neuroscience Next Generation Therapeutics

    1 month ago

    Cambridge, Massachusetts, United States Eli Lilly and Company Full time

    At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities...

  • QA Specialist

    1 month ago

    Cambridge, Massachusetts, United States Proclinical Full time

    QA Specialist - Contract - OnsiteProclinical is seeking a QA Specialist - Equipment and Computer Systems to join a global biopharmaceutical company. This is a contract role located in Cambridge, MA.Skills & Requirements:Specialization in Vaccines - Life science - Bioinformatics - Computer Engineering - Regulatory Requirements in Pharmaceutical...

  • Technical System Health Data Scientist

    2 days ago

    Cambridge, Massachusetts, United States Philips Full time

    Job TitleTechnical System Health Data ScientistJob DescriptionTechnical System Health Data Scientist You will be responsible for working with technical experts and customers to develop advanced reports on patient monitoring system usage and system health. These reports will help customers and Philips understand usage, prevent downtime and achieve performance...

  • Scientist, NGS Assay Development

    2 days ago

    Cambridge, Massachusetts, United States Sana Biotechnology Full time

    About the role Sana Biotechnology is developing the next generation of gene and cell therapies, and we are looking for a highly motivated Scientist to join our Analytical Genomics group. As a Scientist, you will report to Director NGS Assay Development at Cambridge to develop and optimize standard and novel NGS-based assays for cell and gene therapy programs...