Bioinformatics Engineer II

1 month ago

Palo Alto CA United States Stanford Blood Center Full time

The Department of Medicine , Division of Cardiovascular Medicine at Stanford University is seeking a talented Bioinformatics Engineer to join the Bioinformatics Core (BIC) of the Molecular Transducers of Physical Activity Consortium (MoTrPAC). You will help unravel the molecular mechanisms underlying the benefits of physical activity. Under the supervision of co-PIs Dr. Euan Ashley and Dr. Matthew Wheeler, you will play a crucial role in shaping the future of personalized exercise science and public health.

Responsibilities:

As a Bioinformatics Engineer II, you will contribute to the analysis, execution, and development of pipelines and bioinformatic tools for various omics data generated within the MoTrPAC project.

Your primary responsibilities will include:

  • Collaborate with a multidisciplinary team of scientists and engineers to analyze and interpret large-scale multi-omics data.
  • Develop and implement innovative bioinformatics tools and methods to further our understanding of molecular mechanisms underlying the effects of physical activity.
  • Prepare reports and presentations to communicate findings with the team and the larger scientific community.

Qualifications:

To be successful in this role, you should possess an advanced degree (Ph.D. or M.S.) in a field such as statistics, biomedical informatics, engineering, or computer science along with a minimum of two years of relevant professional experience. Candidates should have expertise in the analysis, execution, and development of pipelines and bioinformatic tools for various omics data and be proficient in programming languages like R and/or Python, as well as Linux bash scripting. Familiarity with pipeline languages, container systems, and systems biology approaches for data integration is also essential. Candidates should demonstrate experience in large-scale data analysis (with emphasis on genomics, transcriptomics, epigenomics datasets), biological domain knowledge, bioinformatics, and software development team-based projects. Additionally, they should be willing to work in a highly collaborative environment, be able to adapt quickly, possess strong communication skills, and have the capacity to work independently. Due to extensive teamwork needed, this is a mostly on-site position.

Why Join Us?

  • Work on a highly exciting and innovative multi-omics project with the potential to revolutionize our understanding of physical activity and health.
  • Be part of a world-class research team at Stanford University, led by Dr. Euan Ashley, a pioneer in personalized medicine.
  • Contribute to groundbreaking research with a significant impact on public health and the prevention of diseases.
  • Enjoy a collaborative and stimulating work environment at one of the top universities in the world.

If you are a passionate and dedicated professional with the required qualifications and a strong interest in advancing scientific research, we encourage you to apply for this exciting opportunity. A complete application will include a cover letter.

Duties include:

  • Prioritize and extract data from a variety of sources such as notes, survey results, medical reports, and laboratory data, and maintain its accuracy and completeness.
  • Determine additional data collection and reporting requirements.
  • Design and customize reports based upon data in the database. Oversee and monitor regulatory compliance for utilization of the data.
  • Create complex charts and databases, perform statistical analyses, and develop graphs and tables for publication and presentation.
  • Serve as a resource for non-routine inquiries such as requests for statistics or surveys.
  • Test prototype software and participate in approval and release process for new software.
  • Provide documentation based on audit and reporting criteria to investigators and research staff.

EDUCATION & EXPERIENCE (REQUIRED):

  • Bachelor's degree and three years of relevant experience or combination of education and relevant experience.
  • Experience in a quantitative discipline such as economics, finance, statistics or engineering.

KNOWLEDGE, SKILLS AND ABILITIES (REQUIRED):

  • Substantial experience with MS Office and analytical programs.
  • Excellent writing and analytical skills.
  • Ability to prioritize workload.

PHYSICAL REQUIREMENTS*:

  • Sitting in place at computer for long periods of time with extensive keyboarding/dexterity.

WORKING CONDITIONS:

  • Some work may be performed in a laboratory or field setting.

WORKING STANDARDS:

  • Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations.
  • Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned.

The expected pay range for this position is $104,358 to $128,038 per annum.

At Stanford University, base pay represents only one aspect of the comprehensive rewards package. The Cardinal at Work website ( ) provides detailed information on Stanford’s extensive range of benefits and rewards offered to employees.

Stanford is an equal employment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law.

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