Associate Data Scientist Genomic Medicine

3 weeks ago

Houston, Texas, United States University of Texas MD Anderson Cancer Center Full time

The primary purpose of the Associate Data Scientist is to work as a computational scientist in the laboratory of Dr Kunal Rai, in Genomic Medicine Department at The University of Texas MD Anderson Cancer Center, Houston, Texas.

The position is focused on discovery of cancer-driving epigenome-networks by applying computational methods for the analysis of single cell multiome and spatial transcriptomics and epigenomics (ATAC-Seq/CUT&Tag) datasets and integrate with complex high-dimensional omics datasets from tumor samples in different cancer types/malignancies.

This position will also collaborate with a group of wet lab and computational scientists to derive novel biological insights and identify biomarkers and therapies.

Rai laboratory is situated in a highly dynamic and stimulatory environment for learning. MD Anderson Cancer Center is a top-rated hospital in cancer care in the United States.

The institute offers active graduate and postdoctoral training programs and the unmatched scientific environment of the Texas Medical Center, the world's largest biomedical center.


The

Ideal candidate will have a PhD in Natural/Medical sciences or computational biology, ideally with postdoctoral experience and one year of postdoctoral experience.

At least two publications relating to single cell sequencing applied to cancer patients.

JOB SPECIFIC
COMPETENCIES

  • Carry out preparation, clean-up, and quality control of biological data, including scRNA-Seq, scATAC-Seq, Spatial transcriptomics and/or other multi-dimensional omic data modalities,
  • Develop and maintain pipelines for bioinformatics and statistical analyses of aforementioned data types; activities to include handling raw data, evaluating outputs, optimizing parameters, and summarizing findings.
  • Collaborate with interdisciplinary teams to design experiments and analyze data from various single cell platforms.
  • Maintain knowledge of latest bioinformatic approaches and variety sequencing technologies, especially in single-cell context.
  • Present results at multidisciplinary project meetings.
  • Produce output for scientific publications and co-author said publications.
  • Prepare written reports, manuscripts, and grant applications with investigators.
  • Work closely with the team and collaborators to discover novel therapeutic opportunities for cancer patients.
Expected Skills

  • Deep knowledge of bioinformatics tools and their implementation as part of
pipelines, particularly for scRNA-Seq, scATAC-Seq, Spatial transcriptomics and/or other multi-dimensional omic data modalities.

  • Demonstrated experience and understanding of genomic technologies and analysis of data generated.
  • Analyzing and interpreting outputs to identify insights and hypotheses from data.
  • Understanding of essential statistical methodologies required for bioinformatics analyses.
  • Addressing challenges in bioinformatics as well as mitigation strategies such as bias, batch correction, etc.
  • Utilizing High Performance Computing to run large-scale analyses.
  • Unix, R, Python, or other scripting/programming languages.
  • Other duties as assigned.

COMPETENCIES


With Drive, you see that you can serve as a leader whether you have a formal leadership role or not.

You tackle problems, move past setbacks and hardships, and do not lose sight of your goals.

(Competencies:

Self-Confidence, Analytical Thinking, Innovative Thinking, Technical Expertise)

You demonstrate Professionalism by setting the example for others and consistently modeling MD Anderson's values and service standards. You communicate effectively in a variety of ways.

(Competencies:

Inspire Trust, Oral Communication, Written Communication)

Through Emotional Intelligence, you maintain awareness of your own emotions and the emotions of those around you. Use nonverbal cues and feelings to engage others in an inclusive and responsive way.

(Competencies:

Active Listening, Teaming, Self-Reflection)

Having Coachability means you are engaged in relentless learning. You constantly ask questions and stay curious. You understand that the organization constantly evolves, and you should as well.

(Competencies:

Develop Oneself, Adaptability)

Laboratory environment

This position requires:
Working in Office Environment

____No

__X_ Yes

Working in Patient Care Unit (e.g., Nursing unit; outpatient clinic)

_X_ No

____ Yes

Exposure to human/animal blood, body fluids, or tissues

__X__No

__ Yes

Exposure to harmful chemicals

__X__No

___ Yes

Exposure to radiation

_X_ No

____ Yes

Physical Demands

Indicate the time required to do each of the following physical demands:

Time Spent

Never

0%

Occasionally

1-33%

Frequently

34-66%

Continuously

67-100%

Standing

X

Walking

X

Sitting

X

Reaching

X

Lifting/Carrying

Up to 10 lbs.

X

10lbs to 50 lbs.

X

More than 50 lbs.

X

Pushing/Pulling

Up to 10 lbs.

X

10lbs to 50 lbs.

X

More than 50 lbs.

X

Use computer/keyboard

X

EDUCATION:

Required:

Bachelor's degree in Biomedical Engineering, Electrical Engineering, Computer Engineering, Physics, Applied Mathematics, Statistics, Computer Science, Computational Biology, or related field.


EXPERIENCE:

Required:
Two years experience in scientific software or industry development/analysis.

Preferred:

Ideal candidate will have a PhD in Natural/Medical sciences or computational biology, ideally with postdoctoral experience and one year of postdoctoral experience.

At least two publications relating to single cell sequencing applied to cancer patients.


It is the policy of The University of Texas MD Anderson Cancer Center to provide equal employment opportunity without regard to race, color, religion, age, national origin, sex, gender, sexual orientation, gender identity/expression, disability, protected veteran status, genetic information, or any other basis protected by institutional policy or by federal, state or local laws unless such distinction is required by law.

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