Bioinformatics Engineer I

Found in: Appcast Linkedin GBL C2 - 2 weeks ago

Philadelphia, United States US Tech Solutions Full time

Duration: 6 months Contract to perm, Part-Time


Employment Type: W-2


Description:

• The Bioinformatics Engineer I position is an entry-level position in the support of computational environments focused on the management, transfer, formatting, and general processing of complex data types associated with genomics and proteomics.

• The focus of the position is basic systems implementation of data manipulation and analysis pipelines, applications, general hardware configurations, and bioinformatics-specific hardware configurations.

Bioinformatics programming activities are also included:

• The Bioinformatics Engineer I primarily operates in a local environment as opposed to enterprise-level.

• The position allows for a wide variety of activities described within the job responsibilities and encompasses positions within both research and clinical environments.

• Activities occur with a high degree of supervision with low latitude for independent judgment.

• The Bioinformatics Engineer I will be introduced to the concepts of best practices in scripting, pipeline workflow development, hardware and software configurations, change controls, quality, sustainability, and documentation.

• The Bioinformatics Engineer I is primarily focused on supporting bioinformatics analytical groups and individuals as an engineering resource.


Responsibilities:

• Computational Environment Development and Optimization (70%): Contribute to the maintenance and development of bioinformatics tool portfolio by developing knowledge of internally developed systems, open-source programs, and commercial applications. Provide efficient data management support.

• Implement and maintain commercial and open-source software for common bioinformatics and genomics data analysis.

• Work with bioinformatics group members to develop functioning pipelines upstream of customized analysis workflows.

• Maintain pipelines by staying current with evolving algorithms and standards and incorporating into pipeline

• Execute robust development testing for commonly used applications such as data processing pipelines

• Optimize performance of applications by working with scientific computing and information systems groups to optimize hardware/software parameters

• Define and prioritize requirements for pipeline development over time to incorporate new technologies and platforms via functional communication with bioinformatics group members and bioinformatics end users

• Identify appropriate open-source and commercial products that serve needs of pipeline and/or customized analyses of end users.Implement, update and maintain locally stored data resources required for various analysis tasks.

• Provide efficient data management support including file transfers, data formatting and manipulation, and basic integration of data from a variety of experimental and reference resources.


Skills:

• Strong UNIX/LINUX expertise required.

• Experience with R strongly preferred.

• Experience with Python, Perl, or other languages preferred.

• Experience with pipeline or workflow development frameworks preferred.

• Experience with data management preferred.

• Familiarity with open source and commercial bioinformatics resources and software preferred.

• Experience with genomic data analysis preferred.

• Experience or knowledge of technologies commonly used in biological labs, such as PCR, cloning, electrophoresis gels, and cell culture preferred.

• Knowledge of the working mechanism of microarray, NGS, mass spectrometry, or other high-throughput technologies and awareness of their strengths and weaknesses, as well as applicability to a specific biological problem is preferred.

• Familiarity with resources of genomic data sets and analysis tools, such as UCSC Genome Browser, Bioconductor, ENCODE, and NCBI databases is preferred.


Education:

Bachelor’s Degree required.


Experience:

Previous experience in applied bioinformatics, computational, and genomics/proteomics areas


About US Tech Solutions:

US Tech Solutions is a global staff augmentation firm providing a wide range of talent on-demand and total workforce solutions. To know more about US Tech Solutions, please visit www.ustechsolutions.com.


Recruiter Details:

Name: David

Email: Team.david@ustechsolutions.com

Internal Reference Id: 24- 07456

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