Data Scientist

3 weeks ago


Boston, Massachusetts, United States Rancho BioSciences Full time
Job Title: Data Scientist - Biomedical Knowledge Graph Expert

About the Role: Rancho BioSciences is seeking a skilled Data Scientist to join our team. The ideal candidate will have expertise in developing and optimizing pipelines to utilize knowledge graph embeddings (KGE) in drug discovery.

Responsibilities:

* Design and build scalable data pipelines to implement and execute KGE models on drug discovery knowledge graphs.

* Perform thorough assessments of KGE models to gauge their efficacy in biomedical contexts.

* Create and run tests to explore how various training methodologies and settings affect model performance.

* Apply advanced techniques for optimizing hyperparameters to enhance model precision and adaptability.

* Work in tandem with interdisciplinary groups to ensure KGEs are relevant to practical drug discovery and meet standards for equitable evaluation and replicability.

* Compile and present insights and suggestions for enhancing KGE model assessment practices, contributing to the advancement of biomedical AI knowledge.

Requirements:

* Master's or Ph.D. in Data Science, Bioinformatics, Computer Science, or a related field.

* Demonstrated success in developing and overseeing data pipelines and managing extensive datasets.

* Advanced Python programming abilities, particularly with PyTorch and associated libraries like PyG and PyKEEN.

* Practical knowledge of knowledge graphs, machine learning techniques, and graph embedding models, including their real-world applications.

* Acquaintance with biomedical knowledge graph platforms, including but not limited to Disqover, PrimeKG, Hetionet, or BioKG.

* Proven proficiency in fine-tuning parameters and optimizing models, with specific experience in Bayesian optimization methods.

Preferred Qualifications:

* Experience with biomedical datasets or in the drug discovery field.

* Familiarity with computational biology and systems pharmacology principles.

* Strong understanding of evaluation metrics and best practices for ensuring model reproducibility in scientific research.

What We Offer:

* A competitive salary and benefits package.

* A fast-paced and dynamic work environment that affords employees every opportunity to thrive and grow both professionally and personally.

About Rancho BioSciences:

Rancho BioSciences is an international company offering data curation, data governance, and models, bioinformatics analysis, workflows and pipelines, knowledge mining, target profiles, and business analyst services to clients in pharmaceutical and biotech companies, foundations, government, and hospitals.

Contact Information:

For more information, please contact us at Rancho BioSciences.

Equal Employment Opportunity:

Rancho BioSciences is an equal opportunity employer and welcomes applications from diverse candidates.

Disclaimer:

Rancho BioSciences is not responsible for any errors or omissions in this job posting.

Copyright:

Rancho BioSciences. All rights reserved.
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