Software Engineer
4 weeks ago
Axle is a leading bioscience and information technology company that offers cutting-edge advancements in translational research, biomedical informatics, and data science applications to research centers and healthcare organizations nationally and abroad.
We are seeking a highly ambitious, adaptable, and detail-oriented Software Engineer to join our vibrant team at the National Institutes of Health (NIH), National Center for Advancing Translational Sciences (NCATS).
The successful candidate will lead the development of a Python library aimed at operationalizing semantic mappings between common data models (CDMs) such as FHIR US Core, OMOP, PCORNet, and Sentinel. This project will focus on generating ETL code targeting various platforms and systems, including SQL, Apache Spark, and Pandas DataFrames.
The ideal candidate will have a deep understanding of healthcare data interoperability and extensive experience in developing scalable software solutions. They will be proficient in Python and have a strong background in data engineering, particularly in building ETL pipelines and working with large, complex datasets.
The successful candidate will play a critical role in facilitating the integration of healthcare data across systems, ensuring interoperability, and enhancing data utility for research and clinical applications.
Responsibilities- Lead the design and development of a Python library that ingests machine-readable semantic mappings between FHIR US Core, OMOP, and other CDMs, producing ETL code targeting multiple systems and data platforms.
- Generate executable ETL scripts for SQL, PySpark DataFrames, and Pandas DataFrames based on the semantic mappings.
- Collaborate with subject matter experts (SMEs) to refine and validate mappings between different healthcare data models, including FHIR, OMOP, and other CDMs as required by the project.
- Develop APIs to integrate the generated ETL code into external platforms and services, ensuring the automated conversion of datasets across various environments.
- Work closely with ETL development teams to ensure that the mappings and transformations are accurately implemented and optimized for performance on target systems.
- Maintain the codebase to ensure scalability, modularity, and ease of integration with different platforms and data sources.
- Participate in project reviews, providing updates on progress, identifying challenges, and proposing solutions to ensure project milestones are met.
- Ensure compliance with data privacy and security regulations, particularly in healthcare environments.
- Contribute to knowledge dissemination, preparing technical documentation, participating in workshops, and presenting project outcomes to key stakeholders.
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